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    trpc2a transient receptor potential cation channel subfamily C member 2a [ Danio rerio (zebrafish) ]

    Gene ID: 559914, updated on 2-Nov-2024

    Summary

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    Official Symbol
    trpc2aprovided by ZNC
    Official Full Name
    transient receptor potential cation channel subfamily C member 2aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-130530-602
    See related
    Ensembl:ENSDARG00000039065 AllianceGenome:ZFIN:ZDB-GENE-130530-602
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-93k4.1
    Summary
    Predicted to enable calcium channel activity. Predicted to act upstream of or within calcium ion transmembrane transport. Predicted to be located in membrane. Is expressed in olfactory epithelium and olfactory receptor cell. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See trpc2a in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (38338432..38361776, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (38437339..38460211, complement)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene si:dkey-24p1.6 Neighboring gene stromal interaction molecule 1a Neighboring gene roundabout, axon guidance receptor, homolog 2 (Drosophila) Neighboring gene uncharacterized LOC137487783 Neighboring gene uncharacterized LOC137487784

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogeny and expression of canonical transient receptor potential (TRPC) genes in developing zebrafish. Von Niederhäusern V, et al. Dev Dyn, 2013 Dec. PMID 24038627
    2. Distinct functions of two olfactory marker protein genes derived from teleost-specific whole genome duplication. Suzuki H, et al. BMC Evol Biol, 2015 Nov 10. PMID 26555542, Free PMC Article
    3. Comparative Genomics Reveals Accelerated Evolution of Fright Reaction Genes in Ostariophysan Fishes. Yang L, et al. Front Genet, 2019. PMID 31921316, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    short transient receptor potential channel 2
    Names
    transient receptor potential cation channel subfamily c member 2b
    trpc2b
    zmp:0000000599

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      38338432..38361776 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017351234.3 → XP_017206723.1  short transient receptor potential channel 2

      UniProtKB/TrEMBL
      A0A8M6Z1M8
      Related
      ENSDARP00000128510.1, ENSDART00000155758.2
    Nucleotide Protein Strain
    Heading Accession and Version

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