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    sh3d19 SH3 domain containing 19 [ Danio rerio (zebrafish) ]

    Gene ID: 553811, updated on 2-Nov-2024

    Summary

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    Official Symbol
    sh3d19provided by ZNC
    Official Full Name
    SH3 domain containing 19provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-481
    See related
    Ensembl:ENSDARG00000088202 AllianceGenome:ZFIN:ZDB-GENE-050522-481
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:113078
    Summary
    Is expressed in myotome. Orthologous to human SH3D19 (SH3 domain containing 19). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See sh3d19 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (24394169..24462740, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (23703143..23771862, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene quinoid dihydropteridine reductase b, tandem duplicate 2 Neighboring gene quinoid dihydropteridine reductase b, tandem duplicate 3 Neighboring gene FHF complex subunit HOOK interacting protein 1Aa Neighboring gene glutamyl-tRNA(Gln) amidotransferase, subunit B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC113078

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    SH3 domain-containing protein 19

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020773.2 → NP_001018609.2  SH3 domain-containing protein 19

      Status: VALIDATED

      Source sequence(s)
      BX005068, EH564001
      UniProtKB/TrEMBL
      A0A8M1N6C9, B8A480
      Related
      ENSDARP00000111512.2, ENSDART00000126950.4

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      24394169..24462740 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068219461.1 → XP_068075562.1  SH3 domain-containing protein 19 isoform X2

    2. XM_009291020.4 → XP_009289295.1  SH3 domain-containing protein 19 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B087
      Conserved Domains (3) summary
      cd11816
      Location:809 → 859
      SH3_Eve1_3; Third Src homology 3 domain of ADAM-binding protein Eve-1
      cd11817
      Location:904 → 953
      SH3_Eve1_4; Fourth Src homology 3 domain of ADAM-binding protein Eve-1
      cl17036
      Location:732 → 782
      SH3; Src Homology 3 domain superfamily

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394482.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      267629..336102 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395216.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      132295..171198 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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