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    im:6904045 im:6904045 [ Danio rerio (zebrafish) ]

    Gene ID: 552994, updated on 17-Aug-2024

    Summary

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    Official Symbol
    im:6904045provided by ZNC
    Official Full Name
    im:6904045provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050506-75
    See related
    Ensembl:ENSDARG00000115174 AllianceGenome:ZFIN:ZDB-GENE-050506-75
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human NATD1 (N-acetyltransferase domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (58221865..58226124, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (58166383..58170657, complement)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene stonustoxin subunit beta-like Neighboring gene NACHT, LRR and PYD domains-containing protein 12-like Neighboring gene modulator of smoothened a Neighboring gene von Willebrand factor A domain containing 3A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein NATD1; uncharacterized protein LOC552994; uncharacterized protein im:6904045

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      58221865..58226124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009299838.3 → XP_009298113.1  protein NATD1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AR86
      Conserved Domains (1) summary
      cl17182
      Location:47 → 95
      NAT_SF; N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate

    2. XM_017354840.2 → XP_017210329.1  uncharacterized protein im:6904045 isoform X3

      UniProtKB/TrEMBL
      A0A8M6Z5S7

    3. XM_003198184.5 → XP_003198232.2  protein NATD1 isoform X1

      UniProtKB/TrEMBL
      A0A2R8QAE8, A0A8M1REX4
      Related
      ENSDARP00000148448.1, ENSDART00000187429.1
      Conserved Domains (1) summary
      pfam14542
      Location:47 → 123
      Acetyltransf_CG; GCN5-related N-acetyl-transferase
    Nucleotide Protein Strain
    Heading Accession and Version

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