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    ift80 intraflagellar transport 80 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549947, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ift80provided by Xenbase
    Official Full Name
    intraflagellar transport 80provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1014836
    See related
    Ensembl:ENSXETG00000008716
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    atd2; wdr56
    Orthologs
    human mouse all
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    Genomic context

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    See ift80 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (114793835..114847800)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (103367403..103421421)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes 4 Neighboring gene microRNA mir-16b Neighboring gene microRNA mir-15b Neighboring gene chromosome 5 C3orf80 homolog Neighboring gene interleukin-12 subunit alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Ttc30a affects tubulin modifications in a model for ciliary chondrodysplasia with polycystic kidney disease. Getwan M, et al. Proc Natl Acad Sci U S A, 2021 Sep 28. PMID 34548398, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within kidney development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within skeletal system development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in motile cilium IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    intraflagellar transport protein 80 homolog
    Names
    WD repeat domain 56
    intraflagellar transport 80 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017193.2 → NP_001017193.1  intraflagellar transport protein 80 homolog

      See identical proteins and their annotated locations for NP_001017193.1

      Status: PROVISIONAL

      Source sequence(s)
      CR760581
      UniProtKB/TrEMBL
      A0A6I8Q145, Q28I56
      Related
      ENSXETP00000059162.1, ENSXETT00000062674.3
      Conserved Domains (2) summary
      sd00039
      Location:18 → 55
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:13 → 254
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      114793835..114847800
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012963060.3 → XP_012818514.1  intraflagellar transport protein 80 homolog isoform X1

      UniProtKB/TrEMBL
      A0A6I8Q145, A0A8J0SNX6
      Conserved Domains (2) summary
      sd00039
      Location:13 → 49
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:2 → 176
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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