U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    zdhhc20 zinc finger, DHHC-type containing 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549883, updated on 4-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    zdhhc20provided by Xenbase
    Official Full Name
    zinc finger, DHHC-type containing 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-958735
    See related
    Ensembl:ENSXETG00000027185 AllianceGenome:Xenbase:XB-GENE-958735
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable protein-cysteine S-palmitoyltransferase activity. Predicted to be located in membrane. Orthologous to several human genes including MICU2 (mitochondrial calcium uptake 2). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See zdhhc20 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (157718033..157746987)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (154655694..154684610)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor 9 Neighboring gene mitochondrial calcium uptake 2 Neighboring gene spindle and kinetochore associated complex subunit 3 Neighboring gene Sin3A associated protein 18kDa

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-cysteine S-palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    palmitoyltransferase ZDHHC20
    NP_001017129.1
    XP_017946765.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017129.2 → NP_001017129.1  palmitoyltransferase ZDHHC20

      See identical proteins and their annotated locations for NP_001017129.1

      Status: PROVISIONAL

      Source sequence(s)
      CR761099
      UniProtKB/TrEMBL
      F6TC06, Q28H20
      Related
      ENSXETP00000060252.3, ENSXETT00000060545.3
      Conserved Domains (1) summary
      cl19890
      Location:9 → 298
      DHHC; DHHC palmitoyltransferase

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      157718033..157746987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018091276.2 → XP_017946765.1  palmitoyltransferase ZDHHC20 isoform X1

      UniProtKB/TrEMBL
      A0A8J0T1I2, F6TC06
      Conserved Domains (1) summary
      cl19890
      Location:9 → 310
      DHHC; DHHC palmitoyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.