gtf2a1 general transcription factor IIA 1 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: gtf2a1provided by Xenbase
Official Full Name: general transcription factor IIA 1provided by Xenbase
Primary source: Xenbase:XB-GENE-1006404
See related: Ensembl:ENSXETG00000010036
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: tf2a1; tfiia; gtf2a1-a; gtf2a1-b; tfiiaa/b
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	8	NC_030684.2 (83669442..83729264, complement)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	8	NC_030684.1 (62568267..62578709, complement)

Chromosome 8 - NC_030684.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within endocytosis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within transcription initiation at RNA polymerase II promoter	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of transcription factor TFIIA complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: transcription initiation factor IIA subunit 1

Names: general transcription factor IIA, 1, 19/37kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001016908.2 → NP_001016908.1 transcription initiation factor IIA subunit 1

See identical proteins and their annotated locations for NP_001016908.1

Status: PROVISIONAL

Source sequence(s)

CR848470

UniProtKB/TrEMBL

A0A803J786, F6UIZ0, Q28E35

Related

ENSXETP00000022116.3, ENSXETT00000022116.5

Conserved Domains (1) summary

pfam03153
Location:13 → 367

TFIIA; Transcription factor IIA, alpha/beta subunit

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

83669442..83729264 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031890476.1 → XP_031746336.1 transcription initiation factor IIA subunit 1 isoform X1

UniProtKB/TrEMBL

A0A8J1IP94

Conserved Domains (3) summary

pfam03153
Location:869 → 1223

TFIIA; Transcription factor IIA, alpha/beta subunit

pfam12016
Location:1 → 296

Stonin2_N; Stonin 2

cl10970
Location:515 → 832

AP_MHD_Cterm; C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)