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    pigu phosphatidylinositol glycan anchor biosynthesis class U [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548960, updated on 4-Nov-2024

    Summary

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    Official Symbol
    piguprovided by Xenbase
    Official Full Name
    phosphatidylinositol glycan anchor biosynthesis class Uprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-999831
    See related
    Ensembl:ENSXETG00000019472 AllianceGenome:Xenbase:XB-GENE-999831
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    cdc91l1
    Summary
    Predicted to be involved in attachment of GPI anchor to protein. Predicted to act upstream of or within GPI anchor biosynthetic process and cell division. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGU (phosphatidylinositol glycan anchor biosynthesis class U). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See pigu in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 10 NC_030686.2 (41150458..41162271)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 10 NC_030686.1 (32711109..32723135)

    Chromosome 10 - NC_030686.2Genomic Context describing neighboring genes Neighboring gene nuclear receptor coactivator 6 Neighboring gene tumor protein p53 inducible nuclear protein 2 Neighboring gene microtubule associated protein 1 light chain 3 alpha Neighboring gene transfer RNA methionine (anticodon CAU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in attachment of GPI anchor to protein IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within attachment of GPI anchor to protein IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of GPI-anchor transamidase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of GPI-anchor transamidase complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    phosphatidylinositol glycan anchor biosynthesis class U protein
    Names
    CDC91 cell division cycle 91-like 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016206.2 → NP_001016206.1  phosphatidylinositol glycan anchor biosynthesis class U protein precursor

      See identical proteins and their annotated locations for NP_001016206.1

      Status: PROVISIONAL

      Source sequence(s)
      CR926339
      UniProtKB/TrEMBL
      F6XUQ8, Q28CK0
      Related
      ENSXETP00000042186.5, ENSXETT00000042186.5
      Conserved Domains (1) summary
      pfam06728
      Location:19 → 394
      PIG-U; GPI transamidase subunit PIG-U

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030686.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      41150458..41162271
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012971762.3 → XP_012827216.2  phosphatidylinositol glycan anchor biosynthesis class U protein isoform X1

      UniProtKB/TrEMBL
      A0A8J0SZK9
      Conserved Domains (1) summary
      pfam06728
      Location:14 → 362
      PIG-U; GPI transamidase subunit PIG-U
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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