U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    c6h7orf25 chromosome 6 C7orf25 homolog [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548853, updated on 17-Aug-2024

    Summary

    Official Symbol
    c6h7orf25provided by Xenbase
    Official Full Name
    chromosome 6 C7orf25 homologprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-5848800
    See related
    Ensembl:ENSXETG00000001855
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    c7orf25
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See c6h7orf25 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (57368423..57371468)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (66028431..66031653)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L32 Neighboring gene proteasome subunit alpha 2 Neighboring gene GLI family zinc finger 3 Neighboring gene inhibin subunit beta A

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    UPF0415 protein C7orf25 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001016099.2NP_001016099.1  UPF0415 protein C7orf25 homolog

      See identical proteins and their annotated locations for NP_001016099.1

      Status: PROVISIONAL

      Source sequence(s)
      CR762149
      UniProtKB/Swiss-Prot
      Q5BKL1
      Conserved Domains (2) summary
      pfam07000
      Location:251412
      DUF1308; Protein of unknown function (DUF1308)
      pfam18474
      Location:1219
      DUF5614; Family of unknown function (DUF5614)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      57368423..57371468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012964677.2XP_012820131.1  UPF0415 protein C7orf25 homolog isoform X2

      See identical proteins and their annotated locations for XP_012820131.1

      UniProtKB/Swiss-Prot
      Q5BKL1
      Related
      ENSXETP00000102827.1, ENSXETT00000106778.1
      Conserved Domains (2) summary
      pfam07000
      Location:251412
      DUF1308; Protein of unknown function (DUF1308)
      pfam18474
      Location:1219
      DUF5614; Family of unknown function (DUF5614)
    2. XM_031903374.1XP_031759234.1  UPF0415 protein C7orf25 homolog isoform X1

      UniProtKB/TrEMBL
      A0A5S6K347
      Conserved Domains (2) summary
      pfam07000
      Location:257418
      DUF1308; Protein of unknown function (DUF1308)
      pfam18474
      Location:7225
      DUF5614; Family of unknown function (DUF5614)