rrp1b ribosomal RNA processing 1B [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: rrp1bprovided by Xenbase
Official Full Name: ribosomal RNA processing 1Bprovided by Xenbase
Primary source: Xenbase:XB-GENE-5721102
See related: Ensembl:ENSXETG00000013683
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: nnp1; rrp1; nnp1l
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 17

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	2	NC_030678.2 (1560389..1573251)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	Unplaced Scaffold	NW_016683858.1 (25133..37143, complement)

Chromosome 2 - NC_030678.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by Xenbase

Process	Evidence Code	Pubs
acts_upstream_of_or_within rRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of preribosome, small subunit precursor	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ribosomal RNA processing protein 1 homolog A

Names: ribosomal RNA processing 1 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001015923.2 → NP_001015923.1 ribosomal RNA processing protein 1 homolog A

See identical proteins and their annotated locations for NP_001015923.1

Status: PROVISIONAL

Source sequence(s)

CR926397

UniProtKB/TrEMBL

Q28CG7, Q5BJ74

Related

ENSXETP00000063465.3, ENSXETT00000064192.3

Conserved Domains (1) summary

pfam05997
Location:10 → 212

Nop52; Nucleolar protein,Nop52

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

1560389..1573251

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_031895936.1 → XP_031751796.1 ribosomal RNA processing protein 1 homolog A isoform X1

UniProtKB/TrEMBL

A0A803JB53, Q5BJ74

Related

ENSXETP00000106564.1, ENSXETT00000121830.1

Conserved Domains (2) summary

PTZ00449
Location:373 → 612

PTZ00449; 104 kDa microneme/rhoptry antigen; Provisional

pfam05997
Location:8 → 213

Nop52; Nucleolar protein,Nop52