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    LOC548589 uridine-cytidine kinase 1-like 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 548589, updated on 24-Feb-2024

    Summary

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    Gene symbol
    LOC548589
    Gene description
    uridine-cytidine kinase 1-like 1
    See related
    Ensembl:ENSXETG00000046644
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    uckl1
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    Genomic context

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    See LOC548589 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (161868849..161904772, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683808.1 (550..2494)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116410822 Neighboring gene solute carrier family 30 (zinc transporter), member 3 Neighboring gene uncharacterized LOC116410819 Neighboring gene oocyte zinc finger protein XlCOF8.4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC107757

    General protein information

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    Preferred Names
    uridine-cytidine kinase-like 1
    NP_001015872.1
    XP_031757550.1
    XP_031757551.1
    XP_031757552.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015872.1 → NP_001015872.1  uridine-cytidine kinase-like 1

      See identical proteins and their annotated locations for NP_001015872.1

      Status: PROVISIONAL

      Source sequence(s)
      BC090806
      UniProtKB/TrEMBL
      A0A803JH47, Q5CZL5
      Related
      ENSXETP00000107223.1, ENSXETT00000109214.1
      Conserved Domains (2) summary
      cd02023
      Location:84 → 283
      UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...
      pfam14681
      Location:314 → 517
      UPRTase; Uracil phosphoribosyltransferase

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      161868849..161904772 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031901692.1 → XP_031757552.1  uridine-cytidine kinase-like 1 isoform X3

      UniProtKB/TrEMBL
      A0A803JH47, A0A803JJJ3
      Related
      ENSXETP00000108105.1, ENSXETT00000109672.1
      Conserved Domains (2) summary
      cd02023
      Location:89 → 288
      UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...
      pfam14681
      Location:318 → 521
      UPRTase; Uracil phosphoribosyltransferase

    2. XM_031901690.1 → XP_031757550.1  uridine-cytidine kinase-like 1 isoform X1

      UniProtKB/TrEMBL
      A0A803JH47, A0A803K6V9
      Related
      ENSXETP00000116105.1, ENSXETT00000107398.1
      Conserved Domains (2) summary
      cd02023
      Location:90 → 289
      UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...
      pfam14681
      Location:320 → 523
      UPRTase; Uracil phosphoribosyltransferase

    3. XM_031901691.1 → XP_031757551.1  uridine-cytidine kinase-like 1 isoform X2

      UniProtKB/TrEMBL
      A0A803J6M1, A0A803JH47
      Related
      ENSXETP00000103453.1, ENSXETT00000106852.1
      Conserved Domains (2) summary
      cd02023
      Location:90 → 289
      UMPK; Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, ...
      pfam14681
      Location:319 → 522
      UPRTase; Uracil phosphoribosyltransferase
    Nucleotide Protein Strain
    Heading Accession and Version

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