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    zgc:112970 zgc:112970 [ Danio rerio (zebrafish) ]

    Gene ID: 541543, updated on 2-Nov-2024

    Summary

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    Official Symbol
    zgc:112970provided by ZNC
    Official Full Name
    zgc:112970provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050327-83
    See related
    Ensembl:ENSDARG00000098332 AllianceGenome:ZFIN:ZDB-GENE-050327-83
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable ubiquitin-protein transferase activity. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See zgc:112970 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) Unplaced Scaffold NW_003039384.4 (165030..171310, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003039384.3 (165017..171680, complement)

    NW_003039384.4Genomic Context describing neighboring genes Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene tripartite motif-containing protein 16-like Neighboring gene protein NLRC3-like Neighboring gene zgc:174680 Neighboring gene uncharacterized LOC137489662 Neighboring gene gastrula zinc finger protein XlCGF57.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC541543

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014357.1 → NP_001014379.1  uncharacterized protein LOC541543

      See identical proteins and their annotated locations for NP_001014379.1

      Status: PREDICTED

      Source sequence(s)
      BC091811
      UniProtKB/TrEMBL
      Q58EP7
      Related
      ENSDARP00000134554.1, ENSDART00000168490.2
      Conserved Domains (1) summary
      cl00077
      Location:237 → 350
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NW_003039384.4 Reference GRCz11 Primary Assembly

      Range
      165030..171310 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005168529.5 → XP_005168586.1  uncharacterized protein LOC541543 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BFU3
      Conserved Domains (1) summary
      cl00077
      Location:351 → 464
      HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
    Nucleotide Protein Strain
    Heading Accession and Version

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