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    kctd9a potassium channel tetramerization domain containing 9a [ Danio rerio (zebrafish) ]

    Gene ID: 541442, updated on 12-Sep-2024

    Summary

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    Official Symbol
    kctd9aprovided by ZNC
    Official Full Name
    potassium channel tetramerization domain containing 9aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050320-147
    See related
    Ensembl:ENSDARG00000021209 AllianceGenome:ZFIN:ZDB-GENE-050320-147
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:113115
    Summary
    Predicted to act upstream of or within intracellular signal transduction and protein homooligomerization. Orthologous to human KCTD9 (potassium channel tetramerization domain containing 9). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See kctd9a in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (51586644..51599169, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (51600115..51612640, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene fibroblast growth factor receptor 1a Neighboring gene ankyrin repeat domain 39 Neighboring gene neuropeptide Y receptor Y8b Neighboring gene kelch-like family member 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Comparative Genomics Reveals Accelerated Evolution of Fright Reaction Genes in Ostariophysan Fishes. Yang L, et al. Front Genet, 2019. PMID 31921316, Free PMC Article
    2. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein KCTD9a
    Names
    potassium channel tetramerisation domain containing 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013567.3 → NP_001013585.2  BTB/POZ domain-containing protein KCTD9a

      Status: VALIDATED

      Source sequence(s)
      CR376860
      UniProtKB/TrEMBL
      A0A8M1N4N6, F1Q5M1
      Related
      ENSDARP00000089035.4, ENSDART00000098263.5
      Conserved Domains (5) summary
      smart00225
      Location:90 → 192
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00805
      Location:243 → 280
      Pentapeptide; Pentapeptide repeats (8 copies)
      pfam11834
      Location:2 → 64
      KHA; KHA, dimerization domain of potassium ion channel
      pfam13599
      Location:310 → 384
      Pentapeptide_4; Pentapeptide repeats (9 copies)
      cl02518
      Location:91 → 181
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      51586644..51599169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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