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    septin10 septin 10 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496524, updated on 17-Aug-2024

    Summary

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    Official Symbol
    septin10provided by Xenbase
    Official Full Name
    septin 10provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1005816
    See related
    Ensembl:ENSXETG00000013836
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    sept10
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    Genomic context

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    See septin10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (111919248..111942147)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (108378247..108401279)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene chromosome alignment maintaining phosphoprotein 1 Neighboring gene sosondowah ankyrin repeat domain family member C Neighboring gene uncharacterized LOC116408868 Neighboring gene diphthamide biosynthesis 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of septin complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    septin-10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011111.2 → NP_001011111.1  septin-10

      Status: PROVISIONAL

      Source sequence(s)
      BC084509
      UniProtKB/TrEMBL
      A0A6I8RLK8, A0A6I8SN82, F7AWX7, Q5XGD3
      Related
      ENSXETP00000082337.2, ENSXETT00000075189.2
      Conserved Domains (2) summary
      cd01850
      Location:64 → 332
      CDC_Septin; CDC/Septin GTPase family
      pfam13654
      Location:347 → 421
      AAA_32; AAA domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      111919248..111942147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012956846.3 → XP_012812300.1  septin-10 isoform X1

      UniProtKB/TrEMBL
      A0A6I8SN82, A0A8J0S7H7
      Related
      ENSXETP00000093553.2, ENSXETT00000096476.2
      Conserved Domains (4) summary
      cd01850
      Location:46 → 314
      CDC_Septin; CDC/Septin GTPase family
      COG5019
      Location:27 → 407
      CDC3; Septin family protein [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
      cd16269
      Location:370 → 381
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:326 → 403
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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