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    lrrc20 leucine rich repeat containing 20 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496473, updated on 17-Aug-2024

    Summary

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    Official Symbol
    lrrc20provided by Xenbase
    Official Full Name
    leucine rich repeat containing 20provided by Xenbase
    Primary source
    Xenbase:XB-GENE-953925
    See related
    Ensembl:ENSXETG00000025653
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See lrrc20 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (41980783..42094924, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (32606524..32724818, complement)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene pyrophosphatase (inorganic) 2 Neighboring gene neuropeptide FF receptor 1, gene 1 Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 Neighboring gene nodal growth differentiation factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011063.1 → NP_001011063.1  leucine-rich repeat-containing protein 20

      See identical proteins and their annotated locations for NP_001011063.1

      Status: PROVISIONAL

      Source sequence(s)
      BC084442
      UniProtKB/TrEMBL
      A0A803KL53, F6W603, Q5XGJ7
      Related
      ENSXETP00000114478.1, ENSXETT00000109157.1
      Conserved Domains (3) summary
      COG4886
      Location:47 → 159
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00031
      Location:48 → 71
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:22 → 47
      LRR_RI; leucine-rich repeat [structural motif]

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      41980783..42094924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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