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    ccz1b CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 493560, updated on 4-Nov-2024

    Summary

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    Official Symbol
    ccz1bprovided by Xenbase
    Official Full Name
    CCZ1 homolog B, vacuolar protein trafficking and biogenesis associatedprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-941313
    See related
    Ensembl:ENSXETG00000024053 AllianceGenome:Xenbase:XB-GENE-941313
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ccz1; c7orf28b
    Summary
    Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in lysosomal membrane. Predicted to be part of Mon1-Ccz1 complex. Orthologous to human CCZ1B (CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated) and CCZ1 (CCZ1 homolog, vacuolar protein trafficking and biogenesis associated). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ccz1b in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (25627615..25656658, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (19785570..19816552, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 2 alpha kinase 1 Neighboring gene radial spoke head 10 homolog B (Chlamydomonas) Neighboring gene oncomodulin Neighboring gene oncomodulin 4 gene 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC89699

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Mon1-Ccz1 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar fusion protein CCZ1 homolog
    Names
    CCZ1 homolog, vacuolar protein trafficking and biogenesis associated B
    CCZ1 vacuolar protein trafficking and biogenesis associated B
    CCZ1 vacuolar protein trafficking and biogenesis associated homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008197.2 → NP_001008198.1  vacuolar fusion protein CCZ1 homolog

      See identical proteins and their annotated locations for NP_001008198.1

      Status: PROVISIONAL

      Source sequence(s)
      BC082526
      UniProtKB/Swiss-Prot
      Q28HU2
      UniProtKB/TrEMBL
      Q640R4
      Conserved Domains (1) summary
      pfam08217
      Location:1 → 377
      DUF1712; Fungal domain of unknown function (DUF1712)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      25627615..25656658 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012970351.1 → XP_012825805.1  vacuolar fusion protein CCZ1 homolog isoform X2

      UniProtKB/Swiss-Prot
      Q28HU2
      UniProtKB/TrEMBL
      A0A6I8QBI0
      Related
      ENSXETP00000070070.2, ENSXETT00000103900.2
      Conserved Domains (1) summary
      pfam08217
      Location:17 → 468
      DUF1712; Fungal domain of unknown function (DUF1712)

    2. XM_018097092.1 → XP_017952581.1  vacuolar fusion protein CCZ1 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q28HU2
      UniProtKB/TrEMBL
      A0A8J0T5S7
      Related
      ENSXETP00000071669.1, ENSXETT00000083923.2
      Conserved Domains (1) summary
      pfam08217
      Location:21 → 472
      DUF1712; Fungal domain of unknown function (DUF1712)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q28HU2.1 GenPept UniProtKB/Swiss-Prot:Q28HU2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.