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    foxj2 forkhead box J2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 448174, updated on 17-Aug-2024

    Summary

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    Official Symbol
    foxj2provided by Xenbase
    Official Full Name
    forkhead box J2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-483646
    See related
    Ensembl:ENSXETG00000027639
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    fhx
    Orthologs
    human mouse all
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    Genomic context

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    See foxj2 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (9109582..9125435, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (757249..770608, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016689150.1 (415..2542)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 3 Neighboring gene centrosomal protein 250 Neighboring gene chromosome 7 C12orf57 homolog Neighboring gene complement C3a receptor 1 Neighboring gene peroxisomal biogenesis factor 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Developmental expression of FoxJ1.2, FoxJ2, and FoxQ1 in Xenopus tropicalis. Choi VM, et al. Gene Expr Patterns, 2006 Jun. PMID 16461016
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC69377

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    forkhead box protein J2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001005675.2 → NP_001005675.2  forkhead box protein J2

      See identical proteins and their annotated locations for NP_001005675.2

      Status: VALIDATED

      Source sequence(s)
      BC074713
      UniProtKB/Swiss-Prot
      Q28EM1, Q6GL06
      UniProtKB/TrEMBL
      A0A5S6M3V6, A0A8J1JSF1
      Related
      ENSXETP00000103988.1, ENSXETT00000117977.1
      Conserved Domains (1) summary
      cd20051
      Location:58 → 139
      FH_FOXJ2; Forkhead (FH) domain found in Forkhead box protein J2 (FOXJ2) and similar proteins

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      9109582..9125435 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031904979.1 → XP_031760839.1  forkhead box protein J2 isoform X2

      UniProtKB/Swiss-Prot
      Q28EM1, Q6GL06
      UniProtKB/TrEMBL
      A0A5S6M3V6, A0A8J1JSF1
      Related
      ENSXETP00000113997.1, ENSXETT00000119381.1
      Conserved Domains (1) summary
      cd20051
      Location:58 → 139
      FH_FOXJ2; Forkhead (FH) domain found in Forkhead box protein J2 (FOXJ2) and similar proteins

    2. XM_031904978.1 → XP_031760838.1  forkhead box protein J2 isoform X2

      UniProtKB/Swiss-Prot
      Q28EM1, Q6GL06
      UniProtKB/TrEMBL
      A0A5S6M3V6, A0A8J1JSF1
      Related
      ENSXETP00000115667.1, ENSXETT00000111839.1
      Conserved Domains (1) summary
      cd20051
      Location:58 → 139
      FH_FOXJ2; Forkhead (FH) domain found in Forkhead box protein J2 (FOXJ2) and similar proteins

    3. XM_031904977.1 → XP_031760837.1  forkhead box protein J2 isoform X1

      UniProtKB/TrEMBL
      A0A5S6M3V6, A0A803JN51
      Related
      ENSXETP00000109383.1, ENSXETT00000118966.1
      Conserved Domains (1) summary
      cd20051
      Location:68 → 149
      FH_FOXJ2; Forkhead (FH) domain found in Forkhead box protein J2 (FOXJ2) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q28EM1.1 GenPept UniProtKB/Swiss-Prot:Q28EM1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.