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    ubxn2a UBX domain protein 2A [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 448090, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ubxn2aprovided by Xenbase
    Official Full Name
    UBX domain protein 2Aprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-972873
    See related
    Ensembl:ENSXETG00000018210
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    ubxd4; ubxn2a-a; ubxn2a-b
    Orthologs
    human mouse all
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    Genomic context

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    See ubxn2a in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (145509853..145522316)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (141236621..141249203)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene kelch like family member 29 Neighboring gene palmitoyltransferase ZDHHC2 pseudogene Neighboring gene ATPase family, AAA domain containing 2B Neighboring gene major facilitator superfamily domain-containing protein 2b Neighboring gene WD repeat and coiled coil containing

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    UBX domain-containing protein 2A
    Names
    UBX domain containing 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004828.1 → NP_001004828.1  UBX domain-containing protein 2A

      See identical proteins and their annotated locations for NP_001004828.1

      Status: PROVISIONAL

      Source sequence(s)
      BC074618
      UniProtKB/TrEMBL
      F6SHE4, Q28DT0, Q6GL86
      Related
      ENSXETP00000039482.4, ENSXETT00000039482.5
      Conserved Domains (2) summary
      cd01770
      Location:165 → 243
      p47_UBX; p47-like ubiquitin domain
      pfam08059
      Location:61 → 135
      SEP; SEP domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      145509853..145522316
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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