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    acte1 actin, epsilon 1 [ Danio rerio (zebrafish) ]

    Gene ID: 415164, updated on 17-Aug-2024

    Summary

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    Official Symbol
    acte1provided by ZNC
    Official Full Name
    actin, epsilon 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040625-46
    See related
    Ensembl:ENSDARG00000079111 AllianceGenome:ZFIN:ZDB-GENE-040625-46
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    actc1c; zgc:86725
    Summary
    Orthologous to human ACTBL2 (actin beta like 2). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See acte1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (14109584..14125509)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (14013212..14029109)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene zgc:101566 Neighboring gene guanylate cyclase activator 1g Neighboring gene SH3 and multiple ankyrin repeat domains 2b Neighboring gene RNA polymerase II subunit C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of the actc1c cardiac actin gene in zebrafish. Ojehomon M, et al. Prog Biophys Mol Biol, 2018 Oct. PMID 29913180
    2. Behavioral and proteomic analysis of stress response in zebrafish (Danio rerio). Magdeldin S, et al. J Proteome Res, 2015 Feb 6. PMID 25398274, Free PMC Article
    3. Comparison of proteomic profiles in the zebrafish retina during experimental degeneration and regeneration. Eastlake K, et al. Sci Rep, 2017 Mar 16. PMID 28300160, Free PMC Article
    4. A new evolutionary model for the vertebrate actin family including two novel groups. Witjes L, et al. Mol Phylogenet Evol, 2019 Dec. PMID 31560986
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Identification of the actc1c cardiac actin gene in zebrafish
      Title: Identification of the actc1c cardiac actin gene in zebrafish.
    Submit: New GeneRIF Correction

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    beta-actin-like protein 2; actin, alpha cardiac muscle 1
    Names
    DKEYP-69D2.1
    actin alpha cardiac muscle 1c

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001002074.2 → NP_001002074.2  beta-actin-like protein 2

      Status: VALIDATED

      Source sequence(s)
      CR382374
      UniProtKB/TrEMBL
      A0A0R4IBT5, A0A8M9PXB8, F1RCB6
      Conserved Domains (1) summary
      cl17037
      Location:4 → 377
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      14109584..14125509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009297927.3 → XP_009296202.1  actin, alpha cardiac muscle 1

      UniProtKB/TrEMBL
      F1RCB6
      Related
      ENSDARP00000100195.1, ENSDART00000109883.4
      Conserved Domains (1) summary
      cl17037
      Location:4 → 377
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395192.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      177199..192147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473834.1 → XP_021329509.1  actin, alpha cardiac muscle 1

      Conserved Domains (1) summary
      cl17037
      Location:4 → 377
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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