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    qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 [ Danio rerio (zebrafish) ]

    Gene ID: 402798, updated on 2-Nov-2024

    Summary

    Official Symbol
    qtrt2provided by ZNC
    Official Full Name
    queuine tRNA-ribosyltransferase accessory subunit 2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060427-4
    See related
    Ensembl:ENSDARG00000016093 AllianceGenome:ZFIN:ZDB-GENE-060427-4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    qtrtd1
    Summary
    Predicted to enable protein heterodimerization activity; protein homodimerization activity; and tRNA binding activity. Predicted to be involved in tRNA-guanine transglycosylation. Predicted to act upstream of or within tRNA modification. Predicted to be located in mitochondrion. Orthologous to human QTRT2 (queuine tRNA-ribosyltransferase accessory subunit 2). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See qtrt2 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (21059680..21090517, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (20915254..20946098, complement)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137489235 Neighboring gene uncharacterized LOC137489288 Neighboring gene uncharacterized LOC137489289 Neighboring gene coiled-coil domain containing 191 Neighboring gene zinc finger DHHC-type palmitoyltransferase 23b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • FLJ12960

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables pentosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein heterodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables tRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    enables tRNA-guanosine(34) queuine transglycosylase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within tRNA modification IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within tRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in tRNA-guanine transglycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in tRNA-guanine transglycosylation IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    queuine tRNA-ribosyltransferase accessory subunit 2
    Names
    queuine tRNA-ribosyltransferase domain containing 1
    NP_001112368.2
    XP_005162737.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001118896.2NP_001112368.2  queuine tRNA-ribosyltransferase accessory subunit 2

      Status: VALIDATED

      Source sequence(s)
      CT956069, EH559864
      UniProtKB/Swiss-Prot
      Q7ZVJ6
      UniProtKB/TrEMBL
      A0A8N1Z020, F1R9G2
      Related
      ENSDARP00000113635.1, ENSDART00000140786.3
      Conserved Domains (1) summary
      pfam01702
      Location:137407
      TGT; Queuine tRNA-ribosyltransferase

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      21059680..21090517 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005162680.5XP_005162737.1  queuine tRNA-ribosyltransferase accessory subunit 2 isoform X1

      UniProtKB/Swiss-Prot
      Q7ZVJ6
      UniProtKB/TrEMBL
      A0A8M2B9M3
      Conserved Domains (1) summary
      pfam01702
      Location:137401
      TGT; Queuine tRNA-ribosyltransferase

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395170.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      75002..104583 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)