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    CG42671 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 39268, updated on 4-Jul-2024

    Summary

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    Official Symbol
    CG42671provided by FlyBase
    Primary source
    FLYBASE:FBgn0261553
    Locus tag
    Dmel_CG42671
    See related
    AllianceGenome:FB:FBgn0261553
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG18490; CG34240; Dmel\CG42671
    Old locus tag
    Dmel_CG18490; Dmel_CG34240
    Summary
    Is expressed in organism. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See CG42671 in Genome Data Viewer
    Location:
    68B2-68B3; 3-35 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (11214505..11230745)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (11207605..11223845)

    Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Ubiquitin protein ligase E3A Neighboring gene uncharacterized protein Neighboring gene antisense RNA:CR46050 Neighboring gene long non-coding RNA:CR45405 Neighboring gene Ionotropic receptor 68a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic architecture of natural variation in visual senescence in Drosophila. Carbone MA, et al. Proc Natl Acad Sci U S A, 2016 Oct 25. PMID 27791033, Free PMC Article
    2. Systems genetics of complex traits in Drosophila melanogaster. Ayroles JF, et al. Nat Genet, 2009 Mar. PMID 19234471, Free PMC Article
    3. In vivo analysis of proteomes and interactomes using Parallel Affinity Capture (iPAC) coupled to mass spectrometry. Rees JS, et al. Mol Cell Proteomics, 2011 Jun. PMID 21447707, Free PMC Article
    4. Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing. Mazloomian A, et al. RNA Biol, 2015. PMID 26512413, Free PMC Article
    5. Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila. Meltzer H, et al. Nat Commun, 2019 May 8. PMID 31068592, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG42671-PB
    CG42671-PC
    CG42671-PD
    CG42671-PE
    CG42671-PF
    CG42671-PG
    CG42671-PH
    CG42671-PI
    CG42671-PJ
    CG42671-PK
    CG42671-PL

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_037436.4 Reference assembly

      Range
      11214505..11230745
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001259786.2 → NP_001246715.1  uncharacterized protein Dmel_CG42671, isoform G [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246715.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NR26, Q9VTH2

    2. NM_001202155.2 → NP_001189084.1  uncharacterized protein Dmel_CG42671, isoform D [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001189084.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MRS6, Q6NR26

    3. NM_140197.3 → NP_648454.1  uncharacterized protein Dmel_CG42671, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_648454.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NR26, Q9VTH2
      Related
      FBpp0291837

    4. NM_001300101.1 → NP_001287030.1  uncharacterized protein Dmel_CG42671, isoform L [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287030.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NR26, X2JGK1

    5. NM_001300100.1 → NP_001287029.1  uncharacterized protein Dmel_CG42671, isoform K [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287029.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NR26, X2JGK1

    6. NM_001300099.1 → NP_001287028.1  uncharacterized protein Dmel_CG42671, isoform J [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001287028.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NR26, X2J8Y9

    7. NM_001259787.1 → NP_001246716.1  uncharacterized protein Dmel_CG42671, isoform H [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001246716.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NR26, Q9VTH2

    8. NM_001202153.1 → NP_001189082.1  uncharacterized protein Dmel_CG42671, isoform F [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001189082.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9MRS6, Q6NR26

    9. NM_168453.2 → NP_729690.1  uncharacterized protein Dmel_CG42671, isoform E [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_729690.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NR26, Q9VTH2
      Related
      FBpp0291839

    10. NM_001202154.1 → NP_001189083.1  uncharacterized protein Dmel_CG42671, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001189083.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q6NR26, Q9VTH2

    11. NM_001274777.1 → NP_001261706.1  uncharacterized protein Dmel_CG42671, isoform I [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001261706.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PF53, Q6NR26
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9MRS6 M9MRS6
    M9PF53 M9PF53
    Q6NR26 Q6NR26
    Q9VTH2 Q9VTH2
    X2J8Y9 X2J8Y9
    X2JGK1 X2JGK1

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