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    Tgif2lx2 TGFB-induced factor homeobox 2-like, X-linked 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 367885, updated on 19-Jun-2024

    Summary

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    Official Symbol
    Tgif2lx2provided by RGD
    Official Full Name
    TGFB-induced factor homeobox 2-like, X-linked 2provided by RGD
    Primary source
    RGD:1561826
    See related
    Ensembl:ENSRNOG00000029850 AllianceGenome:RGD:1561826
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561826
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human TGIF2LX (TGFB induced factor homeobox 2 like X-linked). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human all
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    Genomic context

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    See Tgif2lx2 in Genome Data Viewer
    Location:
    Xq31
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (88329744..88330830)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (84109203..84110264)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (90588016..90589052)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene high-mobility group box 1, pseudogene 29 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene cactin, spliceosome C complex subunit, pseudogene 4 Neighboring gene aldolase, fructose-bisphosphate A, pseudogene 8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription repressor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sequence-specific double-stranded DNA binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    homeobox protein TGIF2LX

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      88329744..88330830
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_056985152.2 → XP_056841132.1  homeobox protein TGIF2LX

      UniProtKB/TrEMBL
      A6IVB7, D3ZEM3
      Related
      ENSRNOP00000039918.3
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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