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    CG13280 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 35015, updated on 2-Nov-2024

    Summary

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    Official Symbol
    CG13280provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0032609
    Locus tag
    Dmel_CG13280
    See related
    AllianceGenome:FB:FBgn0032609
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    Dmel\CG13280
    Summary
    Predicted to enable D-xylose 1-dehydrogenase (NADP+) activity. Predicted to be involved in D-xylose catabolic process. Orthologous to human DHDH (dihydrodiol dehydrogenase). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See CG13280 in Genome Data Viewer
    Location:
    36B1-36B1; 2-53 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (16802026..16821093, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (16802026..16821093, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase family 37 member E1 Neighboring gene UDP-glycosyltransferase family 37 member D1 Neighboring gene uncharacterized protein Neighboring gene midway Neighboring gene Chromosome segregation 1 Neighboring gene Aspartyl-tRNA synthetase, mitochondrial Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Oviposition behaviour in Drosophila melanogaster: Genetic and behavioural decoupling between oviposition acceptance and preference for natural fruits. Fanara JJ, et al. J Evol Biol, 2023 Jan. PMID 36357966
    2. Identification of GOLPH3 Partners in Drosophila Unveils Potential Novel Roles in Tumorigenesis and Neural Disorders. Sechi S, et al. Cells, 2021 Sep 6. PMID 34571985, Free PMC Article
    3. Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions. Erives AJ. Dev Genes Evol, 2015 Sep. PMID 26173873, Free PMC Article
    4. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208
    5. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables D-xylose 1-dehydrogenase (NADP+) activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in D-xylose catabolic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG13280-PA
    CG13280-PB
    NP_001260517.1
    NP_609812.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      16802026..16821093 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_135968.2 → NP_609812.1  uncharacterized protein Dmel_CG13280, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_609812.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q8T8Z0, Q9VJH7
      Related
      FBpp0080485
      Conserved Domains (2) summary
      COG0673
      Location:89 → 387
      MviM; Predicted dehydrogenase [General function prediction only]
      pfam01408
      Location:92 → 213
      GFO_IDH_MocA; Oxidoreductase family, NAD-binding Rossmann fold

    2. NM_001273588.2 → NP_001260517.1  uncharacterized protein Dmel_CG13280, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001260517.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      M9PG29, Q8T8Z0
      Conserved Domains (2) summary
      COG0673
      Location:35 → 333
      MviM; Predicted dehydrogenase [General function prediction only]
      pfam01408
      Location:38 → 159
      GFO_IDH_MocA; Oxidoreductase family, NAD-binding Rossmann fold
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    M9PG29 M9PG29
    Q8T8Z0 Q8T8Z0
    Q9VJH7 Q9VJH7

    Gene LinkOut

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