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    CG6961 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 32869, updated on 2-Nov-2024

    Summary

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    Official Symbol
    CG6961provided by FlyBase
    Official Full Name
    uncharacterized proteinprovided by FlyBase
    Primary source
    FLYBASE:FBgn0030959
    Locus tag
    Dmel_CG6961
    See related
    AllianceGenome:FB:FBgn0030959
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    cg6961; Dmel\CG6961
    Summary
    Predicted to enable mRNA binding activity. Predicted to be involved in mRNA export from nucleus. Predicted to be active in nucleus. Is expressed in organism. Orthologous to human POLDIP3 (DNA polymerase delta interacting protein 3). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See CG6961 in Genome Data Viewer
    Location:
    17D5-17D6; 1-60 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) X NC_004354.4 (18786142..18788210, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) X NC_004354.3 (18680175..18682243, complement)

    Chromosome X - NC_004354.4Genomic Context describing neighboring genes Neighboring gene Cholecystokinin-like receptor at 17D3 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene S6 Kinase Like Neighboring gene Autophagy-related 101 Neighboring gene bangles and beads

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Y Chromosome Modulates Splicing and Sex-Biased Intron Retention Rates in Drosophila. Wang M, et al. Genetics, 2018 Mar. PMID 29263027, Free PMC Article
    2. Genetic screen for genes involved in Chk2 signaling in Drosophila. Park SY, et al. Mol Cells, 2008 Oct 31. PMID 18612247
    3. The exon junction complex is required for definition and excision of neighboring introns in Drosophila. Hayashi R, et al. Genes Dev, 2014 Aug 15. PMID 25081352, Free PMC Article
    4. The RNA-binding protein Swm is critical for Drosophila melanogaster intestinal progenitor cell maintenance. Ariyapala IS, et al. Genetics, 2022 Sep 30. PMID 35762963, Free PMC Article
    5. spenito is required for sex determination in Drosophila melanogaster. Yan D, et al. Proc Natl Acad Sci U S A, 2015 Sep 15. PMID 26324914, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables mRNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    Names
    CG6961-PA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004354.4 Reference assembly

      Range
      18786142..18788210 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_133097.3 → NP_573325.1  uncharacterized protein Dmel_CG6961 [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_573325.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A9UN96, Q95RF0, Q9VWQ3
      Related
      FBpp0074431
      Conserved Domains (2) summary
      COG0724
      Location:256 → 443
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12681
      Location:366 → 434
      RRM_SKAR; RNA recognition motif in S6K1 Aly/REF-like target (SKAR) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9VWQ3 Q9VWQ3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.