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    Ccdc85a coiled-coil domain containing 85A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289855, updated on 2-Nov-2024

    Summary

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    Symbol
    Ccdc85aprovided by RGD
    Full Name
    coiled-coil domain containing 85Aprovided by RGD
    Primary source
    RGD:1311700
    See related
    EnsemblRapid:ENSRNOG00000003374 AllianceGenome:RGD:1311700
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311700
    Summary
    Predicted to be located in adherens junction. Orthologous to human CCDC85A (coiled-coil domain containing 85A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 135.2), Brain (RPKM 98.9) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc85a in Genome Data Viewer
    Location:
    14q22
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (106327580..106560205, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (102126574..102359207, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (112719482..112900724, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108352818 Neighboring gene uncharacterized LOC120096706 Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC120096707 Neighboring gene uncharacterized LOC120096708

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in adherens junction ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 85A
    Names
    coiled-coil domain-containing protein 85A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191553.2 → NP_001178482.1  coiled-coil domain-containing protein 85A isoform 1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      D3ZMD4
      Related
      ENSRNOP00000099034.1, ENSRNOT00000151384.1
      Conserved Domains (1) summary
      pfam10226
      Location:29 → 202
      DUF2216; Uncharacterized conserved proteins (DUF2216)

    2. NM_001415114.1 → NP_001402043.1  coiled-coil domain-containing protein 85A isoform 2

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A8I6GJ51
      Related
      ENSRNOP00000104865.1, ENSRNOT00000121697.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      106327580..106560205 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039091770.2 → XP_038947698.1  coiled-coil domain-containing protein 85A isoform X1

      Related
      ENSRNOP00000075420.3, ENSRNOT00000081981.3
      Conserved Domains (1) summary
      pfam10226
      Location:29 → 202
      CCDC85; CCDC85 family

    2. XM_039091772.2 → XP_038947700.1  coiled-coil domain-containing protein 85A isoform X2

      UniProtKB/TrEMBL
      A0A0G2KAJ5, A6JQA1
      Conserved Domains (1) summary
      pfam10226
      Location:29 → 202
      CCDC85; CCDC85 family

    3. XM_039091773.2 → XP_038947701.1  coiled-coil domain-containing protein 85A isoform X3

      UniProtKB/TrEMBL
      A0A8I6A4G3, A6JQA1
      Related
      ENSRNOP00000086775.1, ENSRNOT00000113987.2
      Conserved Domains (1) summary
      pfam10226
      Location:29 → 202
      CCDC85; CCDC85 family

    4. XM_039091774.2 → XP_038947702.1  coiled-coil domain-containing protein 85A isoform X4

      Conserved Domains (1) summary
      pfam10226
      Location:1 → 74
      CCDC85; CCDC85 family

    5. XM_039091775.2 → XP_038947703.1  coiled-coil domain-containing protein 85A isoform X5

      UniProtKB/TrEMBL
      A6JQA1
      Conserved Domains (1) summary
      pfam10226
      Location:29 → 202
      CCDC85; CCDC85 family
    Nucleotide Protein Strain
    Heading Accession and Version

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