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    Mgat4e-like Mgat4 family, member E-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289035, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Mgat4e-likeprovided by RGD
    Official Full Name
    Mgat4 family, member E-likeprovided by RGD
    Primary source
    RGD:1359351
    See related
    EnsemblRapid:ENSRNOG00000027702 AllianceGenome:RGD:1359351
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward (RPKM 72.6) See more
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    Genomic context

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    See Mgat4e-like in Genome Data Viewer
    Location:
    13q13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (48389451..48394857)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (45837458..45843215)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (51218428..51225602)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120096189 Neighboring gene PTPRF interacting protein alpha 4 Neighboring gene transmembrane protein 183A Neighboring gene uncharacterized LOC120096190 Neighboring gene cytochrome b5 reductase 1 Neighboring gene adiponectin receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables acetylglucosaminyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Mgat4 family, member E-like; mgat4 family, member E-like
    Names
    alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase MGAT4E-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013872.1 → NP_001013894.2  Mgat4 family, member E-like precursor

      See identical proteins and their annotated locations for NP_001013894.2

      Status: VALIDATED

      Source sequence(s)
      BC079259
      UniProtKB/TrEMBL
      A6ICB7, F7F6L0
      Related
      ENSRNOP00000034392.4, ENSRNOT00000033636.6
      Conserved Domains (1) summary
      pfam04666
      Location:55 → 319
      Glyco_transf_54; N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      48389451..48394857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063272082.1 → XP_063128152.1  mgat4 family, member E-like isoform X1

      UniProtKB/TrEMBL
      A6ICB7, F7F6L0

    2. XM_017598699.3 → XP_017454188.1  mgat4 family, member E-like isoform X2

      UniProtKB/TrEMBL
      Q6AXZ1
      Conserved Domains (2) summary
      cd21105
      Location:197 → 221
      PGAP4-like; putative TM2 helix [structural motif]
      cl04660
      Location:12 → 276
      PGAP4-like; Post-GPI attachment to proteins factor 4 and similar proteins

    3. XM_039090438.2 → XP_038946366.1  mgat4 family, member E-like isoform X2

      UniProtKB/TrEMBL
      Q6AXZ1
      Conserved Domains (2) summary
      cd21105
      Location:197 → 221
      PGAP4-like; putative TM2 helix [structural motif]
      cl04660
      Location:12 → 276
      PGAP4-like; Post-GPI attachment to proteins factor 4 and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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