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    Slc35f5 solute carrier family 35, member F5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288993, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Slc35f5provided by RGD
    Official Full Name
    solute carrier family 35, member F5provided by RGD
    Primary source
    RGD:1308125
    See related
    EnsemblRapid:ENSRNOG00000003403 AllianceGenome:RGD:1308125
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human SLC35F5 (solute carrier family 35 member F5). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Heart (RPKM 358.7), Liver (RPKM 107.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Slc35f5 in Genome Data Viewer
    Location:
    13q12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (39544253..39581210)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (36992118..37028549)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (41882733..41922358)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102554198 Neighboring gene uncharacterized LOC134481486 Neighboring gene actin related protein 3 Neighboring gene G protein-coupled receptor 39 Neighboring gene Ly6/Plaur domain containing 1 Neighboring gene NCK-associated protein 5 Neighboring gene proteasome activator subunit 2, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier family 35 member F5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105950.1 → NP_001099420.1  solute carrier family 35 member F5

      See identical proteins and their annotated locations for NP_001099420.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474028
      UniProtKB/TrEMBL
      A0A8I6G454, A6K821, D3ZT80
      Related
      ENSRNOP00000004581.5, ENSRNOT00000004581.7
      Conserved Domains (1) summary
      COG0697
      Location:246 → 471
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      39544253..39581210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063272063.1 → XP_063128133.1  solute carrier family 35 member F5 isoform X1

      Related
      ENSRNOP00000102521.1, ENSRNOT00000142436.1

    2. XM_006249671.5 → XP_006249733.1  solute carrier family 35 member F5 isoform X2

      UniProtKB/TrEMBL
      A0A8I6G3G3
      Related
      ENSRNOP00000079551.2, ENSRNOT00000094536.2
      Conserved Domains (2) summary
      COG0697
      Location:268 → 493
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
      pfam00892
      Location:350 → 493
      EamA; EamA-like transporter family

    3. XM_017598688.3 → XP_017454177.1  solute carrier family 35 member F5 isoform X3

      UniProtKB/TrEMBL
      A0A8I6G3G3

    4. XM_039090423.2 → XP_038946351.1  solute carrier family 35 member F5 isoform X4

      UniProtKB/TrEMBL
      A0A8I6ANK8, A0A8I6G454
      Related
      ENSRNOP00000090608.1, ENSRNOT00000118661.2
      Conserved Domains (1) summary
      COG0697
      Location:225 → 450
      RhaT; Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]
    Nucleotide Protein Strain
    Heading Accession and Version

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