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    Tf2-1 retrotransposable element/transposon Tf2-type [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2543673, updated on 10-Oct-2024

    Summary

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    Official Symbol
    Tf2-1
    Official Full Name
    retrotransposable element/transposon Tf2-type
    Primary source
    PomBase:SPAC9.04
    Locus tag
    SPOM_SPAC9.04
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See Tf2-1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (1465847..1469848)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene U5 snRNP complex subunit Brr2 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ATP-dependent 3' to 5' DNA helicase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The fission yeast CENP-B protein Abp1 prevents pervasive transcription of repetitive DNA elements. Daulny A, et al. Biochim Biophys Acta, 2016 Oct. PMID 27345571, Free PMC Article
    2. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    3. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    4. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene. Lang BF, et al. J Mol Biol, 1985 Aug 5. PMID 4046021

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables RNA-directed DNA polymerase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in DNA integration IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    retrotransposable element/transposon Tf2-type

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      1465847..1469848
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001018779.3 → NP_593347.1  retrotransposable element/transposon Tf2-type [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593347.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P0CT34, P0CT35, P0CT37, P0CT40, Q05654, Q96TJ6
      Conserved Domains (7) summary
      pfam12382
      Location:219 → 355
      Peptidase_A2E; Retrotransposon peptidase
      COG2801
      Location:968 → 1140
      Tra5; Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]
      cd01647
      Location:439 → 615
      RT_LTR; RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the ...
      cd09274
      Location:710 → 833
      RNase_HI_RT_Ty3; Ty3/Gypsy family of RNase HI in long-term repeat retroelements
      pfam00078
      Location:455 → 615
      RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
      pfam00665
      Location:983 → 1093
      rve; Integrase core domain
      cl21453
      Location:324 → 471
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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