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    Obp50c Odorant-binding protein 50c [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 246434, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Obp50cprovided by FlyBase
    Official Full Name
    Odorant-binding protein 50cprovided by FlyBase
    Primary source
    FLYBASE:FBgn0050072
    Locus tag
    Dmel_CG30072
    See related
    AllianceGenome:FB:FBgn0050072
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CG30072; DmelObp50c; Dmel\CG30072
    Summary
    Predicted to enable odorant binding activity. Predicted to be involved in sensory perception of chemical stimulus. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Oct 2024]
    Orthologs
    all
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    Genomic context

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    See Obp50c in Genome Data Viewer
    Location:
    50F6-50F6; 2-70 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (14371186..14373006)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (10258691..10260511)

    Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Odorant-binding protein 50a Neighboring gene Odorant-binding protein 50b Neighboring gene Odorant-binding protein 50d Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional Diversification, Redundancy, and Epistasis among Paralogs of the Drosophila melanogaster Obp50a-d Gene Cluster. Johnstun JA, et al. Mol Biol Evol, 2021 May 4. PMID 33560417, Free PMC Article
    2. "Plus-C" odorant-binding protein genes in two Drosophila species and the malaria mosquito Anopheles gambiae. Zhou JJ, et al. Gene, 2004 Feb 18. PMID 14960367
    3. Evolution of gene expression in the Drosophila olfactory system. Kopp A, et al. Mol Biol Evol, 2008 Jun. PMID 18296696, Free PMC Article
    4. The 40-Year Mystery of Insect Odorant-Binding Proteins. Rihani K, et al. Biomolecules, 2021 Mar 30. PMID 33808208, Free PMC Article
    5. Uncovering the functional constraints underlying the genomic organization of the odorant-binding protein genes. Librado P, et al. Genome Biol Evol, 2013. PMID 24148943, Free PMC Article

    See all (30) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables odorant binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sensory perception of chemical stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Odorant-binding protein 50c
    Names
    CG30072-PC
    Obp50c-PC

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033778.4 Reference assembly

      Range
      14371186..14373006
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_166052.3 → NP_725387.3  Odorant-binding protein 50c [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_725387.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A1Z9Q4, Q4V3M8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1Z9Q4 A1Z9Q4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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