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    Mageb11 MAGE family member B11 [ Mus musculus (house mouse) ]

    Gene ID: 212952, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Mageb11provided by MGI
    Official Full Name
    MAGE family member B11provided by MGI
    Primary source
    MGI:MGI:2684890
    See related
    Ensembl:ENSMUSG00000091497 AllianceGenome:MGI:2684890
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm44
    Summary
    Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human MAGEB5 (MAGE family member B5). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Mageb11 in Genome Data Viewer
    Location:
    X C1; X 40.19 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (89921961..89936740)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (90878355..90893134)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene fumarate hydratase 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47532 Neighboring gene bone morphogenetic 4, pseudogene Neighboring gene zinc finger protein 459 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47533 Neighboring gene predicted gene 14773

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC212952

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101450.1 → NP_001094920.1  uncharacterized protein LOC212952

      See identical proteins and their annotated locations for NP_001094920.1

      Status: PREDICTED

      Source sequence(s)
      CH466611
      Consensus CDS
      CCDS53130.1
      UniProtKB/TrEMBL
      G3UW88
      Related
      ENSMUSP00000129722.2, ENSMUST00000172155.2
      Conserved Domains (2) summary
      pfam01454
      Location:128 → 262
      MAGE; MAGE family
      pfam12440
      Location:5 → 43
      MAGE_N; Melanoma associated antigen family N terminal

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      89921961..89936740
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006527928.2 → XP_006527991.1  uncharacterized protein LOC212952 isoform X1

      See identical proteins and their annotated locations for XP_006527991.1

      UniProtKB/TrEMBL
      G3UW88
      Conserved Domains (2) summary
      pfam01454
      Location:128 → 262
      MAGE; MAGE family
      pfam12440
      Location:5 → 43
      MAGE_N; Melanoma associated antigen family N terminal
    Nucleotide Protein Strain
    Heading Accession and Version

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