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    C25G6.3 AMP-dependent synthetase/ligase domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 182919, updated on 18-Sep-2024

    Summary

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    Official Symbol
    C25G6.3
    Official Full Name
    AMP-dependent synthetase/ligase domain-containing protein
    Primary source
    WormBase:WBGene00016108
    Locus tag
    CELE_C25G6.3
    See related
    AllianceGenome:WB:WBGene00016108
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable CoA-ligase activity. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See C25G6.3 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Sequence:
    Chromosome: X; NC_003284.9 (1233093..1238903, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene Protein HAIKU1 Neighboring gene Caskin-2;SAM domain-containing protein Neighboring gene Tetraspanin Neighboring gene DUF19 domain-containing protein Neighboring gene Putative neuropeptide Y receptor 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables CoA-ligase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in peroxisome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AMP-dependent synthetase/ligase domain-containing protein
    NP_508231.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      1233093..1238903 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_075830.4 → NP_508231.2  AMP-dependent synthetase/ligase domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_508231.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      G4S328, Q18176
      Conserved Domains (2) summary
      pfam00501
      Location:99 → 516
      AMP-binding; AMP-binding enzyme
      cl17068
      Location:115 → 543
      AFD_class_I; Adenylate forming domain, Class I superfamily
    Nucleotide Protein
    Heading Accession and Version

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