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    lron-1 LRRCT domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 181553, updated on 2-Nov-2024

    Summary

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    Official Symbol
    lron-1
    Official Full Name
    LRRCT domain-containing protein
    Primary source
    WormBase:WBGene00008093
    Locus tag
    CELE_C44H4.1
    See related
    AllianceGenome:WB:WBGene00008093
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in cell development. Predicted to be located in membrane. Is expressed in pharynx. Orthologous to human LRRC15 (leucine rich repeat containing 15). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See lron-1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Sequence:
    Chromosome: X; NC_003284.9 (14572719..14576125)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Nuclear hormone receptor family member nhr-3 Neighboring gene ncRNA Neighboring gene Chorein N-terminal domain-containing protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Leucine-rich repeat-containing protein let-4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In vitro and in vivo characterization of Caenorhabditis elegans PHA-4/FoxA response elements. Raharjo WH, et al. Dev Dyn, 2010 Aug. PMID 20623595
    2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in cell development IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    LRRCT domain-containing protein
    NP_510424.4
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      14572719..14576125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_078023.7 → NP_510424.4  LRRCT domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_510424.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q93377
      Conserved Domains (5) summary
      PRK15370
      Location:58 → 289
      PRK15370; type III secretion system effector E3 ubiquitin transferase SlrP
      smart00082
      Location:431 → 472
      LRRCT; Leucine rich repeat C-terminal domain
      sd00031
      Location:414 → 435
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:161 → 184
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:343 → 402
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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