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    pqn-84 Galectin [ Caenorhabditis elegans ]

    Gene ID: 176601, updated on 2-Nov-2024

    Summary

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    Official Symbol
    pqn-84
    Official Full Name
    Galectin
    Primary source
    WormBase:WBGene00004165
    Locus tag
    CELE_Y41C4A.5
    See related
    AllianceGenome:WB:WBGene00004165
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable carbohydrate binding activity and galactoside binding activity. Orthologous to several human genes including CLC (Charcot-Leyden crystal galectin); LGALS12 (galectin 12); and LGALS13 (galectin 13). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See pqn-84 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    9
    Sequence:
    Chromosome: III; NC_003281.10 (11700259..11702862)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene DUF148 domain-containing protein Neighboring gene FACT complex subunit Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein Neighboring gene Nematode cuticle collagen N-terminal domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity. Ceron J, et al. BMC Dev Biol, 2007 Apr 6. PMID 17417969, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables carbohydrate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables galactoside binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Galectin
    NP_499514.3
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      11700259..11702862
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_067113.7 → NP_499514.3  Galectin [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9U2I7
      Conserved Domains (1) summary
      pfam00337
      Location:33 → 164
      Gal-bind_lectin; Galactoside-binding lectin
    Nucleotide Protein
    Heading Accession and Version

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