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    rpn-6.2 putative 26S proteasome regulatory subunit rpn-6.2 [ Caenorhabditis elegans ]

    Gene ID: 176273, updated on 2-Nov-2024

    Summary

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    Official Symbol
    rpn-6.2
    Official Full Name
    putative 26S proteasome regulatory subunit rpn-6.2
    Primary source
    WormBase:WBGene00010309
    Locus tag
    CELE_F59B2.5
    See related
    AllianceGenome:WB:WBGene00010309
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable structural molecule activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be part of proteasome regulatory particle, lid subcomplex. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See rpn-6.2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    6
    Sequence:
    Chromosome: III; NC_003281.10 (8999817..9001999, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene putative sugar kinase R08D7.7 Neighboring gene putative amino acid transporter skat-1 Neighboring gene N-acetylglucosamine-6-phosphate deacetylase Neighboring gene Secreted protein Neighboring gene Zinc finger-interacting factor 1 Neighboring gene Ras-related protein rab-6.1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    2. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables structural molecule activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of proteasome complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of proteasome regulatory particle, lid subcomplex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    putative 26S proteasome regulatory subunit rpn-6.2
    NP_001254972.1
    • Confirmed by transcript evidence
    NP_001254973.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      8999817..9001999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001268043.2 → NP_001254972.1  putative 26S proteasome regulatory subunit rpn-6.2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254972.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0P266, C0P267, P34481
      Conserved Domains (1) summary
      COG5159
      Location:14 → 411
      RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

    2. NM_001268044.3 → NP_001254973.1  putative 26S proteasome regulatory subunit rpn-6.2 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001254973.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P34481
      Conserved Domains (1) summary
      COG5159
      Location:1 → 208
      RPN6; 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P34481.3

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