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    C30B5.2 [ Caenorhabditis elegans ]

    Gene ID: 174028, updated on 22-Aug-2024

    Summary

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    Official Symbol
    C30B5.2
    Primary source
    WormBase:WBGene00016244
    Locus tag
    CELE_C30B5.2
    See related
    AllianceGenome:WB:WBGene00016244
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to be located in endosome membrane. Predicted to be integral component of membrane. Predicted to be active in endosome. Orthologous to human LEPROT (leptin receptor overlapping transcript) and LEPROTL1 (leptin receptor overlapping transcript like 1). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See C30B5.2 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    5
    Sequence:
    Chromosome: II; NC_003280.10 (6197180..6198308)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Cytoplasmic polyadenylation element-binding protein 2 Neighboring gene RRM domain-containing protein Neighboring gene Suppressor of ZYg-1 Neighboring gene Kringle domain-containing protein Neighboring gene G-protein coupled receptor daf-37 Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in late endosome to vacuole transport via multivesicular body sorting pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Vacuolar protein sorting-associated protein 55 homolog
    NP_001379744.1
    • Confirmed by transcript evidence
    NP_495238.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      6197180..6198308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062837.8 → NP_495238.2  Vacuolar protein sorting-associated protein 55 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495238.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q18319, Q7JPI9, Q7JPJ0, Q95QS8
      Conserved Domains (1) summary
      pfam04133
      Location:7 → 123
      Vps55; Vacuolar protein sorting 55

    2. NM_001393094.1 → NP_001379744.1  Vacuolar protein sorting-associated protein 55 homolog [Caenorhabditis elegans]

      Status: REVIEWED

      Conserved Domains (1) summary
      pfam04133
      Location:7 → 121
      Vps55; Vacuolar protein sorting 55
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q18319.3

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