U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    EEED8.4 Putative RNA-binding protein EEED8.4 [ Caenorhabditis elegans ]

    Gene ID: 173921, updated on 28-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EEED8.4
    Official Full Name
    Putative RNA-binding protein EEED8.4
    Primary source
    WormBase:WBGene00017135
    Locus tag
    CELE_EEED8.4
    See related
    AllianceGenome:WB:WBGene00017135
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable poly(A) binding activity. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Oct 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EEED8.4 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003280.10 (5410467..5411235)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 Neighboring gene C-type lectin domain-containing protein 141 Neighboring gene Putative RNA-binding protein EEED8.12 Neighboring gene FBA_2 domain-containing protein Neighboring gene Glutaredoxin domain-containing protein Neighboring gene MATH domain-containing protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables poly(A) binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Putative RNA-binding protein EEED8.4
    NP_495022.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      5410467..5411235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_062621.7 → NP_495022.2  Putative RNA-binding protein EEED8.4 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_495022.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q09295
      Conserved Domains (2) summary
      COG0724
      Location:2 → 127
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12306
      Location:56 → 128
      RRM_II_PABPs; RNA recognition motif in type II polyadenylate-binding proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q09295.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools