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    LOC1271855 trimeric intracellular cation channel type 1B.1 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1271855, updated on 22-Jun-2024

    Summary

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    Gene symbol
    LOC1271855
    Gene description
    trimeric intracellular cation channel type 1B.1
    See related
    VectorBase:AGAMI1_014895
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP000393
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC1271855 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) X NC_064600.1 (7245369..7250014)

    Chromosome X - NC_064600.1Genomic Context describing neighboring genes Neighboring gene negative elongation factor complex member TH1 Neighboring gene synaptobrevin homolog YKT6 Neighboring gene tether containing UBX domain for GLUT4 Neighboring gene uncharacterized LOC11175858

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064600.1 Chromosome X Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables identical protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables potassium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trimeric intracellular cation channel type 1B.1
    Names
    AGAP000393-PA
    AGAP000393-PB
    Trimeric intracellular cation channel type B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064600.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      7245369..7250014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003436935.2 → XP_003436983.1  trimeric intracellular cation channel type 1B.1

      See identical proteins and their annotated locations for XP_003436983.1

      UniProtKB/TrEMBL
      A0NCG5, F5HJK2
      Conserved Domains (1) summary
      pfam05197
      Location:42 → 226
      TRIC; TRIC channel

    2. XM_061645903.1 → XP_061501887.1  trimeric intracellular cation channel type 1B.1

      UniProtKB/TrEMBL
      A0NCG5, F5HJK2

    3. XM_061645917.1 → XP_061501901.1  trimeric intracellular cation channel type 1B.1

      UniProtKB/TrEMBL
      A0NCG5, F5HJK2
    Nucleotide Protein Strain
    Heading Accession and Version

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