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    LOC1269242 chromobox protein homolog 3 [ Anopheles gambiae (African malaria mosquito) ]

    Gene ID: 1269242, updated on 22-Jun-2024

    Summary

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    Gene symbol
    LOC1269242
    Gene description
    chromobox protein homolog 3
    See related
    VectorBase:AGAMI1_013677
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Anopheles gambiae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Culicidae; Anophelinae; Anopheles
    Also known as
    AGAP009444
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    Genomic context

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    See LOC1269242 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_12 current idAnoGambNW_F1_1 (GCF_943734735.2) 3 NC_064602.1 (33422600..33424017, complement)

    Chromosome 3 - NC_064602.1Genomic Context describing neighboring genes Neighboring gene Cyclin-dependent kinase subunit 30A Neighboring gene Excitatory amino acid transporter 1 Neighboring gene transmembrane protein 115 Neighboring gene Na[+]/H[+] hydrogen exchanger 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_064602.1 Chromosome 3 Reference idAnoGambNW_F1_1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pilot Anopheles gambiae full-length cDNA study: sequencing and initial characterization of 35,575 clones. Gomez SM, et al. Genome Biol, 2005. PMID 15833126, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of pericentric heterochromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromobox protein homolog 3
    Names
    AGAP009444-PA
    chromobox protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_943734735.2-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idAnoGambNW_F1_1 Primary Assembly

    Genomic

    1. NC_064602.1 Reference idAnoGambNW_F1_1 Primary Assembly

      Range
      33422600..33424017 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_307857.4 → XP_307857.3  chromobox protein homolog 3

      See identical proteins and their annotated locations for XP_307857.3

      UniProtKB/TrEMBL
      Q7QKG5
      Conserved Domains (2) summary
      pfam01393
      Location:153 → 204
      Chromo_shadow; Chromo shadow domain
      cl28914
      Location:23 → 72
      CD_CSD; CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials