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    si:dkey-108k21.15 si:dkey-108k21.15 [ Danio rerio (zebrafish) ]

    Gene ID: 103909881, updated on 17-Aug-2024

    Summary

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    Official Symbol
    si:dkey-108k21.15provided by ZNC
    Official Full Name
    si:dkey-108k21.15provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131121-80
    See related
    Ensembl:ENSDARG00000111648 AllianceGenome:ZFIN:ZDB-GENE-131121-80
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

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    Location:
    chromosome: 25
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (35064617..35065152)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (34559659..34560186)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene si:dkey-108k21.13 Neighboring gene H3 clustered histone 13 a Neighboring gene zgc:165555 Neighboring gene kinesin family member 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in defense response to Gram-positive bacterium ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in disruption of plasma membrane integrity in another organism ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in innate immune response ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular space ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    histone H2A-like; si:dkey-108k21.15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423816.1 → NP_001410745.1  si:dkey-108k21.15

      Status: VALIDATED

      Source sequence(s)
      CU302436
      UniProtKB/TrEMBL
      A0A2R8Q9E8, A0A2R8RKP2, A6QL59, Q561S9

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      35064617..35065152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009298183.3 → XP_009296458.1  histone H2A-like

      UniProtKB/TrEMBL
      Q561S9
      Related
      ENSDARP00000147987.1, ENSDART00000186079.1
      Conserved Domains (1) summary
      PTZ00017
      Location:1 → 128
      PTZ00017; histone H2A; Provisional
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.