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    Vamp9 vesicle-associated membrane protein 9 [ Mus musculus (house mouse) ]

    Gene ID: 102639650, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Vamp9provided by MGI
    Official Full Name
    vesicle-associated membrane protein 9provided by MGI
    Primary source
    MGI:MGI:5595070
    See related
    Ensembl:ENSMUSG00000105078 AllianceGenome:MGI:5595070
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm35911
    Summary
    Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in exocytosis and vesicle fusion. Predicted to be part of SNARE complex. Orthologous to human VAMP9P (vesicle associated membrane protein 9, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Vamp9 in Genome Data Viewer
    Location:
    5 E4; 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (100054101..100099508)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (99906242..99951649)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13713 Neighboring gene predicted gene, 38413 Neighboring gene STARR-seq mESC enhancer starr_13714 Neighboring gene STARR-seq mESC enhancer starr_13715 Neighboring gene predicted gene, 42126 Neighboring gene STARR-positive B cell enhancer mm9_chr5:100335210-100335511 Neighboring gene RIKEN cDNA 4930524J08 gene Neighboring gene STARR-seq mESC enhancer starr_13719 Neighboring gene heterogeneous nuclear ribonucleoprotein D Neighboring gene predicted gene, 42127

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
    2. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables SNAP receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables SNARE binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in vesicle fusion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of SNARE complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC102639650

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001378420.1 → NP_001365349.1  uncharacterized protein LOC102639650

      Status: VALIDATED

      Source sequence(s)
      AC022062
      UniProtKB/TrEMBL
      A0A1D5RLS7
      Related
      ENSMUSP00000148490.2, ENSMUST00000198837.3
      Conserved Domains (2) summary
      cd14824
      Location:5 → 119
      Longin; longin domain
      cl22856
      Location:125 → 191
      SNARE; SNARE motif

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      100054101..100099508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030254960.1 → XP_030110820.1  uncharacterized protein LOC102639650 isoform X2

      Conserved Domains (1) summary
      cl22856
      Location:52 → 118
      SNARE; SNARE motif

    2. XM_011249609.2 → XP_011247911.1  uncharacterized protein LOC102639650 isoform X3

      See identical proteins and their annotated locations for XP_011247911.1

      Conserved Domains (1) summary
      cl38905
      Location:5 → 116
      longin-like; Longin-like domains

    3. XM_011249608.3 → XP_011247910.1  uncharacterized protein LOC102639650 isoform X1

      See identical proteins and their annotated locations for XP_011247910.1

      Conserved Domains (1) summary
      cd14824
      Location:5 → 116
      Longin; longin domain
    Nucleotide Protein
    Heading Accession and Version

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