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    lncRNA:CR42721 long non-coding RNA::CR42721 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 10178845, updated on 28-Oct-2024

    Summary

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    Official Symbol
    lncRNA:CR42721provided by FlyBase
    Official Full Name
    long non-coding RNA::CR42721provided by FlyBase
    Primary source
    FLYBASE:FBgn0261638
    Locus tag
    Dmel_CR42721
    See related
    AllianceGenome:FB:FBgn0261638
    Gene type
    ncRNA
    Organism
    Drosophila melanogaster
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    CR42721; Dmel\CR42721
    Summary
    Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Oct 2024]
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    Genomic context

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    See lncRNA:CR42721 in Genome Data Viewer
    Location:
    84A5-84A5; 3-48 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (6767050..6779728)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (2592772..2605450)

    Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45593 Neighboring gene long non-coding RNA:CR44930 Neighboring gene Amalgam Neighboring gene long non-coding RNA:CR43435 Neighboring gene mir-993 stem loop Neighboring gene Deformed Neighboring gene long non-coding RNA::CR42651 Neighboring gene mir-10 stem loop

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome. MacMillan HA, et al. Sci Rep, 2016 Jun 30. PMID 27357258, Free PMC Article
    2. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
    3. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
    4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    • lncRNA:CR42721-RA; Dmel\lncRNA:CR42721-RA; CR42721-RA; Dmel\CR42721-RA
    • lncRNA:CR42721-RB; Dmel\lncRNA:CR42721-RB; CR42721-RB; Dmel\CR42721-RB

    Gene Ontology Provided by FlyBase

    Process Evidence Code Pubs
    involved_in miRNA-mediated post-transcriptional gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of RISC complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033777.3 Reference assembly

      Range
      6767050..6779728
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. NR_048332.1 RNA Sequence

      Status: REVIEWED

    2. NR_037752.2 RNA Sequence

      Status: REVIEWED

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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