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    dclre1a DNA cross-link repair 1A [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 101733924, updated on 17-Aug-2024

    Summary

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    Official Symbol
    dclre1aprovided by Xenbase
    Official Full Name
    DNA cross-link repair 1Aprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-13579711
    See related
    Ensembl:ENSXETG00000044479
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    pso2; snm1; snm1a
    Orthologs
    human mouse all
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    Genomic context

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    See dclre1a in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (3775856..3787079, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683452.1 (392958..404451)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain-containing family S member 1-like Neighboring gene pleckstrin homology domain-containing family S member 1 Neighboring gene NHL repeat containing 2 Neighboring gene adrenoceptor beta 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA cross-link repair 1A protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      3775856..3787079 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004919380.4 → XP_004919437.2  DNA cross-link repair 1A protein isoform X1

      UniProtKB/TrEMBL
      A0A803JMT8, A0A8J0R840
      Conserved Domains (2) summary
      cd16298
      Location:607 → 763
      SNM1A-like_MBL-fold; 5'-exonucleases human SNM1A and related proteins; MBL-fold metallo-hydrolase domain
      pfam07522
      Location:834 → 938
      DRMBL; DNA repair metallo-beta-lactamase

    2. XM_004919379.4 → XP_004919436.2  DNA cross-link repair 1A protein isoform X2

      UniProtKB/TrEMBL
      A0A803J7M3, A0A803JMT8
      Related
      ENSXETP00000114473.1, ENSXETT00000113047.1
      Conserved Domains (2) summary
      cd16298
      Location:574 → 730
      SNM1A-like_MBL-fold; 5'-exonucleases human SNM1A and related proteins; MBL-fold metallo-hydrolase domain
      pfam07522
      Location:801 → 905
      DRMBL; DNA repair metallo-beta-lactamase
    Nucleotide Protein Strain
    Heading Accession and Version

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