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    loxl3 lysyl oxidase like 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 101733365, updated on 18-Sep-2024

    Summary

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    Official Symbol
    loxl3provided by Xenbase
    Official Full Name
    lysyl oxidase like 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-5825439
    See related
    Ensembl:ENSXETG00000019030
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    loxl-3
    Orthologs
    human mouse all
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    Genomic context

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    See loxl3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (251591..325275)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684448.1 (6955..9038)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S26 Neighboring gene meiosis 1 associated protein Neighboring gene htra serine peptidase 2 Neighboring gene BCL2 binding component 3 Neighboring gene uncharacterized LOC116408404 Neighboring gene AUP1, lipid droplet regulating VLDL assembly factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein-lysine 6-oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within peptidyl-lysine oxidation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lysyl oxidase homolog 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      251591..325275
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031895200.1 → XP_031751060.1  lysyl oxidase homolog 3 isoform X1

      UniProtKB/TrEMBL
      A0A803K0Z7, A0A8J1J218
      Conserved Domains (2) summary
      smart00202
      Location:343 → 443
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:565 → 764
      Lysyl_oxidase; Lysyl oxidase

    2. XM_031895201.1 → XP_031751061.1  lysyl oxidase homolog 3 isoform X2

      UniProtKB/TrEMBL
      A0A803K0Z7, A0A8J1J2Y0
      Related
      ENSXETP00000103833.1, ENSXETT00000116994.1
      Conserved Domains (3) summary
      smart00202
      Location:342 → 442
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:180 → 216
      SRCR; Scavenger receptor cysteine-rich domain
      pfam01186
      Location:564 → 763
      Lysyl_oxidase; Lysyl oxidase

    3. XM_031895202.1 → XP_031751062.1  lysyl oxidase homolog 3 isoform X3

      UniProtKB/TrEMBL
      A0A803K0Z7, A0A8J1IZN4
      Related
      ENSXETP00000113972.1, ENSXETT00000115919.1
      Conserved Domains (2) summary
      smart00202
      Location:343 → 443
      SR; Scavenger receptor Cys-rich
      pfam01186
      Location:561 → 760
      Lysyl_oxidase; Lysyl oxidase

    4. XM_031895203.1 → XP_031751063.1  lysyl oxidase homolog 3 isoform X4

      UniProtKB/TrEMBL
      A0A803JB56, A0A8J1IZQ2
      Conserved Domains (3) summary
      smart00202
      Location:303 → 403
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:180 → 262
      SRCR; Scavenger receptor cysteine-rich domain
      pfam01186
      Location:525 → 724
      Lysyl_oxidase; Lysyl oxidase

    5. XM_031895204.1 → XP_031751064.1  lysyl oxidase homolog 3 isoform X5

      UniProtKB/TrEMBL
      A0A803JB56, A0A803JTY0
      Related
      ENSXETP00000111472.1, ENSXETT00000116785.1
      Conserved Domains (3) summary
      smart00202
      Location:302 → 402
      SR; Scavenger receptor Cys-rich
      pfam00530
      Location:180 → 262
      SRCR; Scavenger receptor cysteine-rich domain
      pfam01186
      Location:524 → 723
      Lysyl_oxidase; Lysyl oxidase
    Nucleotide Protein Strain
    Heading Accession and Version

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