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    LOC101730868 lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 101730868, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LOC101730868provided by Xenbase
    Official Full Name
    lipopolysaccharide-induced tumor necrosis factor-alpha factor homologprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-29084887
    See related
    Ensembl:ENSXETG00000040353
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    See LOC101730868 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (38219587..38239402, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (34849704..34869552, complement)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 7 (herpes virus-associated) Neighboring gene lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog Neighboring gene uncharacterized LOC105948538 Neighboring gene LITAF domain containing Neighboring gene calcium regulated heat stable protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      38219587..38239402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012971362.3 → XP_012826816.1  lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X2

      UniProtKB/TrEMBL
      A0A6I8SY07
      Related
      ENSXETP00000098339.1, ENSXETT00000075009.2
      Conserved Domains (1) summary
      pfam10601
      Location:101 → 170
      zf-LITAF-like; LITAF-like zinc ribbon domain

    2. XM_004917943.4 → XP_004918000.1  lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X3

      UniProtKB/TrEMBL
      A0A6I8SWC0
      Related
      ENSXETP00000097060.1, ENSXETT00000067649.2
      Conserved Domains (1) summary
      pfam10601
      Location:101 → 170
      zf-LITAF-like; LITAF-like zinc ribbon domain

    3. XM_004917942.4 → XP_004917999.1  lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog isoform X1

      UniProtKB/TrEMBL
      A0A6I8RSA3, A0A6I8SPW5
      Related
      ENSXETP00000099769.1, ENSXETT00000093955.2
      Conserved Domains (1) summary
      pfam10601
      Location:112 → 181
      zf-LITAF-like; LITAF-like zinc ribbon domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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