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    si:ch73-181d5.4 si:ch73-181d5.4 [ Danio rerio (zebrafish) ]

    Gene ID: 100538306, updated on 2-Nov-2024

    Summary

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    Official Symbol
    si:ch73-181d5.4provided by ZNC
    Official Full Name
    si:ch73-181d5.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100922-118
    See related
    Ensembl:ENSDARG00000057907 AllianceGenome:ZFIN:ZDB-GENE-100922-118
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA-templated transcription. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch73-181d5.4 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (457859..478152, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (444766..465367, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 55b Neighboring gene tetraspanin 2b Neighboring gene histocompatibility (minor) 13 Neighboring gene collagen, type IX, alpha 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    death-inducer obliterator 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      457859..478152 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003201155.6 → XP_003201203.2  death-inducer obliterator 1

      UniProtKB/TrEMBL
      A0A8M1RN27, E7FB55, F1R824
      Related
      ENSDARP00000121822.2, ENSDART00000140749.5
      Conserved Domains (4) summary
      PHA03255
      Location:820 → 963
      PHA03255; BDLF3; Provisional
      cd15547
      Location:211 → 253
      PHD_SHPRH; PHD finger found in E3 ubiquitin-protein ligase SHPRH
      pfam07500
      Location:626 → 717
      TFIIS_M; Transcription factor S-II (TFIIS), central domain
      pfam07744
      Location:983 → 1089
      SPOC; SPOC domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials