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    si:ch211-269e2.1 si:ch211-269e2.1 [ Danio rerio (zebrafish) ]

    Gene ID: 100537961, updated on 2-Nov-2024

    Summary

    Official Symbol
    si:ch211-269e2.1provided by ZNC
    Official Full Name
    si:ch211-269e2.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070912-267
    See related
    Ensembl:ENSDARG00000074225 AllianceGenome:ZFIN:ZDB-GENE-070912-267
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable chromatin binding activity. Predicted to be involved in sister chromatid cohesion. Predicted to act upstream of or within chromosome segregation. Predicted to be located in chromatin. Predicted to be part of cohesin complex. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See si:ch211-269e2.1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (34433044..34482613)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (34623487..34674043)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene si:ch211-218d20.15 Neighboring gene mediator complex subunit 14 Neighboring gene protein phosphatase 2, regulatory subunit B'', beta Neighboring gene shox homeobox

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell division IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cell division IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within chromosome segregation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sister chromatid cohesion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in chromatin IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in chromosome IEA
    Inferred from Electronic Annotation
    more info
     
    located_in chromosome, centromeric region IEA
    Inferred from Electronic Annotation
    more info
     
    part_of cohesin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      34433044..34482613
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017357835.3XP_017213324.1  cohesin subunit SA-2

      UniProtKB/TrEMBL
      A0A8M6Z159, B0S5T4
      Related
      ENSDARP00000117413.1, ENSDART00000137416.2
      Conserved Domains (1) summary
      pfam08514
      Location:182290
      STAG; STAG domain