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    xrra1 X-ray radiation resistance associated 1 [ Danio rerio (zebrafish) ]

    Gene ID: 100536325, updated on 2-Nov-2024

    Summary

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    Official Symbol
    xrra1provided by ZNC
    Official Full Name
    X-ray radiation resistance associated 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-101216-2
    See related
    Ensembl:ENSDARG00000089578 AllianceGenome:ZFIN:ZDB-GENE-101216-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human XRRA1 (X-ray radiation resistance associated 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See xrra1 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (21782338..21791254, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (21745702..21754628, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene polymerase (DNA-directed), delta 3, accessory subunit Neighboring gene chordin-like 2 Neighboring gene sialidase 3 (membrane sialidase), tandem duplicate 1 Neighboring gene sialidase 3 (membrane sialidase), tandem duplicate 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    X-ray radiation resistance-associated protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      21782338..21791254 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003200866.6 → XP_003200914.4  X-ray radiation resistance-associated protein 1

      Related
      ENSDARP00000126247.1, ENSDART00000151094.3
    Nucleotide Protein Strain
    Heading Accession and Version

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