U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC100535105 leucine-rich repeat neuronal protein 3-like [ Danio rerio (zebrafish) ]

    Gene ID: 100535105, updated on 27-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC100535105
    Gene description
    leucine-rich repeat neuronal protein 3-like
    See related
    Ensembl:ENSDARG00000102702
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC100535105 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (7209614..7222399, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (7201032..7213823, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103910396 Neighboring gene sterile alpha motif domain-containing protein 3-like Neighboring gene uncharacterized LOC795847 Neighboring gene troponin I4a

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    leucine-rich repeat neuronal protein 3-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      7209614..7222399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009300057.3 → XP_009298332.1  leucine-rich repeat neuronal protein 3-like

      See identical proteins and their annotated locations for XP_009298332.1

      UniProtKB/TrEMBL
      A0A8M3AR64, H9GYJ3
      Related
      ENSDARP00000131085.1, ENSDART00000161297.2
      Conserved Domains (8) summary
      smart00082
      Location:368 → 411
      LRRCT; Leucine rich repeat C-terminal domain
      smart00410
      Location:429 → 513
      IG_like; Immunoglobulin like
      cd00116
      Location:88 → 273
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:360 → 372
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:95 → 117
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00041
      Location:518 → 593
      fn3; Fibronectin type III domain
      pfam13855
      Location:116 → 176
      LRR_8; Leucine rich repeat
      cl11960
      Location:437 → 513
      Ig; Immunoglobulin domain

    2. XM_009300056.3 → XP_009298331.1  leucine-rich repeat neuronal protein 3-like

      See identical proteins and their annotated locations for XP_009298331.1

      UniProtKB/TrEMBL
      A0A8M3AR64, H9GYJ3
      Conserved Domains (8) summary
      smart00082
      Location:368 → 411
      LRRCT; Leucine rich repeat C-terminal domain
      smart00410
      Location:429 → 513
      IG_like; Immunoglobulin like
      cd00116
      Location:88 → 273
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:360 → 372
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:95 → 117
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00041
      Location:518 → 593
      fn3; Fibronectin type III domain
      pfam13855
      Location:116 → 176
      LRR_8; Leucine rich repeat
      cl11960
      Location:437 → 513
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools