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    LOC100497338 synaptotagmin-1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100497338, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LOC100497338provided by Xenbase
    Official Full Name
    synaptotagmin-1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-29083647
    See related
    Ensembl:ENSXETG00000006049
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    See LOC100497338 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (33985768..34011630)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (39089314..39117867)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene zinc finger protein 81 Neighboring gene fucosyltransferase 6 gene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    synaptotagmin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      33985768..34011630
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002938707.5 → XP_002938753.2  synaptotagmin-1

      See identical proteins and their annotated locations for XP_002938753.2

      UniProtKB/TrEMBL
      F7DU57
      Conserved Domains (1) summary
      cl14603
      Location:265 → 396
      C2; C2 domain

    2. XM_012962396.3 → XP_012817850.1  synaptotagmin-1

      See identical proteins and their annotated locations for XP_012817850.1

      UniProtKB/TrEMBL
      F7DU57
      Related
      ENSXETP00000013323.4, ENSXETT00000013323.5
      Conserved Domains (1) summary
      cl14603
      Location:265 → 396
      C2; C2 domain

    3. XM_031900632.1 → XP_031756492.1  synaptotagmin-1

      UniProtKB/TrEMBL
      F7DU57
      Conserved Domains (1) summary
      cl14603
      Location:265 → 396
      C2; C2 domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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