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    LOC100496148 galectin-4 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100496148, updated on 4-Nov-2024

    Summary

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    Official Symbol
    LOC100496148provided by Xenbase
    Official Full Name
    galectin-4provided by Xenbase
    Primary source
    Xenbase:XB-GENE-29083003
    See related
    AllianceGenome:Xenbase:XB-GENE-29083003
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable IgE binding activity and carbohydrate binding activity. Predicted to act upstream of or within RNA splicing. Predicted to be located in extracellular region. Predicted to be part of spliceosomal complex. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See LOC100496148 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (104699266..104713430, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (84395028..84407560, complement)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene discs large homolog associated protein 5 Neighboring gene lectin, galactoside-binding, soluble, 3 Neighboring gene pinin, desmosome associated protein Neighboring gene trafficking protein particle complex subunit 6B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables IgE binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    galectin-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      104699266..104713430 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018096979.2 → XP_017952468.1  galectin-4 isoform X2

      UniProtKB/TrEMBL
      A0A8J0T3H8
      Conserved Domains (1) summary
      smart00908
      Location:33 → 152
      Gal-bind_lectin; Galactoside-binding lectin

    2. XM_031892043.1 → XP_031747903.1  galectin-4 isoform X1

      UniProtKB/TrEMBL
      A0A8J1IQN6
      Conserved Domains (1) summary
      smart00908
      Location:38 → 157
      Gal-bind_lectin; Galactoside-binding lectin
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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