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    slc33a1 solute carrier family 33 (acetyl-CoA transporter), member 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100494967, updated on 4-Nov-2024

    Summary

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    Official Symbol
    slc33a1provided by Xenbase
    Official Full Name
    solute carrier family 33 (acetyl-CoA transporter), member 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-971528
    See related
    Ensembl:ENSXETG00000012306 AllianceGenome:Xenbase:XB-GENE-971528
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Summary
    Predicted to enable acetyl-CoA transmembrane transporter activity. Predicted to act upstream of or within acetyl-CoA transmembrane transport; central nervous system neuron axonogenesis; and negative regulation of BMP signaling pathway. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 42. Orthologous to human SLC33A1 (solute carrier family 33 member 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See slc33a1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (116509140..116523240)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (105062917..105076914)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene extracellular calcium-sensing receptor-like Neighboring gene guanine monophosphate synthase Neighboring gene chromosome 5 C3orf33 homolog Neighboring gene phospholipase C eta 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables acetyl-CoA transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within acetyl-CoA transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within central nervous system neuron axonogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within negative regulation of BMP signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    acetyl-coenzyme A transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      116509140..116523240
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004914443.4 → XP_004914500.1  acetyl-coenzyme A transporter 1

      See identical proteins and their annotated locations for XP_004914500.1

      UniProtKB/TrEMBL
      F6Z7F4
      Related
      ENSXETP00000026912.4, ENSXETT00000026912.5
      Conserved Domains (1) summary
      cl28910
      Location:63 → 531
      MFS; Major Facilitator Superfamily

    2. XM_002933245.5 → XP_002933291.1  acetyl-coenzyme A transporter 1

      See identical proteins and their annotated locations for XP_002933291.1

      UniProtKB/TrEMBL
      F6Z7F4
      Conserved Domains (1) summary
      cl28910
      Location:63 → 531
      MFS; Major Facilitator Superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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